4K50

Rhinovirus 16 polymerase elongation complex (r1_form)

Structural Biology Knowledgebase: 4K50 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.93 Å
  • R-Value Free: 0.247
  • R-Value Work: 0.191

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4K50

Classification: Transferase / rna

Total Structure Weight: 274440.66


Macromolecule Entities
Molecule Chains Length Organism Details
RNA polymerase 3D-POL A, E, I, M 460 Rhinovirus a EC#: 2.7.7.48 IUBMB
Fragment: unp residues 1694-2153
Gene Name(s):
Macromolecule Entities
Molecule Chains Length Organism Details
RNA (33-MER) B, F, J, N 35 synthetic
RNA (5'-R(P*GP*CP*CP*CP*GP*GP*AP*CP*GP*AP*GP*AP*GP*A)-3') C, G, K, O 14 synthetic

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SO4
Query on SO4

A SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

A, I GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ACT
Query on ACT

A, B, E, F, I, J, K, M ACETATE ION
C2 H3 O2
QTBSBXVTEAMEQO-UHFFFAOYSA-M
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.93 Å
  • R-Value Free: 0.247
  • R-Value Work: 0.191
  • Space Group: P 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 53.75 α = 90.01
b = 113.89 β = 90.49
c = 122.60 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-04-12
  • Released Date: 2013-05-22
  • Deposition author(s): Gong, P., Peersen, O.B.

Revision History

  • 2013-07-03
    Type: Citation | Details: Citation update