4K4Z

Coxsackievirus B3 polymerase elongation complex (r2_Mg_form)

Structural Biology Knowledgebase: 4K4Z SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.17 Å
  • R-Value Free: 0.244
  • R-Value Work: 0.204

Literature

Macromolecules
Sequence Display for 4K4Z

Classification: Transferase / rna

Total Structure Weight: 275121.56


Macromolecule Entities
Molecule Chains Length Organism Details
RNA-dependent RNA polymerase A, E, I, M 472 Enterovirus b EC#: 2.7.7.48 IUBMB
Fragment: UNP RESIDUES 1724-2185
Mutation: L252I
Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
RNA (5'-R(*AP*AP*GP*UP*CP*UP*CP*CP*AP*GP*GP*UP*CP*UP*CP*UP*CP*GP*UP*CP*GP*AP*AP*A)-3') B, F, J, N 24 synthetic
RNA (5'-R(*UP*GP*UP*UP*CP*GP*AP*CP*GP*AP*GP*AP*GP*A)-3') C, G, K, O 14 synthetic
RNA (5'-R(P*GP*GP*GP*AP*GP*AP*UP*GP*A)-3') D, H, L, P 9 synthetic

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
MG
Query on MG

A, E, I, M MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.17 Å
  • R-Value Free: 0.244
  • R-Value Work: 0.204
  • Space Group: P 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 60.64 α = 89.98
b = 60.63 β = 89.92
c = 194.68 γ = 78.68

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-04-12
  • Released Date: 2013-05-22
  • Deposition author(s): Gong, P., Peersen, O.B.

Revision History

  • 2015-05-20
    Type: Polymer description | Details: --
  • 2013-07-03
    Type: Citation | Details: Citation update