4JN1

An Antidote for Dabigatran

Structural Biology Knowledgebase: 4JN1 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.89 Å
  • R-Value Free: 0.197
  • R-Value Work: 0.176

Literature

Macromolecules
Sequence Display for 4JN1

Classification: immune system

Total Structure Weight: 48573.65

Macromolecule Entities
Molecule Chains Length Organism Details
anti-dabigatran Fab1, heavy chain H 225 Mus musculus
anti-dabigatran Fab1, light chain L 219 Mus musculus

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
GOL
Query on GOL

H, L GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.89 Å
  • R-Value Free: 0.197
  • R-Value Work: 0.176
  • Space Group: C 1 2 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 113.13 α = 90.00
b = 78.22 β = 89.91
c = 63.43 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-03-14
  • Released Date: 2013-03-27
  • Deposition author(s): Schiele, F., Nar, H.

Revision History

  • 2013-07-24
    Type: Citation | Details: Citation update