4JKA

Open and closed forms of R1865A human PRP8 RNase H-like domain with bound Co ion

Structural Biology Knowledgebase: 4JKA SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.32 Å
  • R-Value Free: 0.166
  • R-Value Work: 0.142

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4JKA

Classification: RNA BINDING PROTEIN

Total Structure Weight: 51401.19

Macromolecule Entities
Molecule Chains Length Organism Details
Pre-mRNA-processing-splicing factor 8 A, B 222 Homo sapiens Fragment: PRP8 RNase H-like domain, UNP residues 1769-1990
Mutation: R1865A
Gene Name(s): PRPF8 Gene View PRPC8

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
CO
Query on CO

A, B COBALT (II) ION
Co
XLJKHNWPARRRJB-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CL
Query on CL

A, B CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.32 Å
  • R-Value Free: 0.166
  • R-Value Work: 0.142
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 76.25 α = 90.00
b = 78.22 β = 90.00
c = 94.37 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-03-09
  • Released Date: 2013-05-22
  • Deposition author(s): Schellenberg, M.J., Wu, T., Ritchie, D.B., Atta, K.A., MacMillan, A.M.

Revision History

  • 2013-06-26
    Type: Citation | Details: Citation update
  • 2013-06-19
    Type: Citation | Details: Citation update