4JDS

SETD7 in complex with inhibitor PF-5426 and S-adenosyl-methionine

Structural Biology Knowledgebase: 4JDS SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.223
  • R-Value Work: 0.199

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4JDS

Classification: transferase / transferase inhibitor

Total Structure Weight: 122156.68

Macromolecule Entities
Molecule Chains Length Organism Details
Histone-lysine N-methyltransferase SETD7 A, B, C, D 264 Homo sapiens EC#: 2.1.1.43 IUBMB
Gene Name(s): SETD7 Gene View KIAA1717 KMT7 SET7 SET9

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
1L4
Query on 1L4

A, B, C, D N-[(2R)-3-(3-cyanophenyl)-1-oxo-1-(pyrrolidin- 1-yl)propan-2-yl]-8-fluoro-1,2,3,4-tetrahydroisoquinoline- 6-sulfonamide
C23 H25 F N4 O3 S
HMBXWXQQVHJMOO-JOCHJYFZSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SAM
Query on SAM

A, B, C, D S-ADENOSYLMETHIONINE
C15 H22 N6 O5 S
MEFKEPWMEQBLKI-FCKMPRQPSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
UNX
Query on UNX

A, B, C, D UNKNOWN ATOM OR ION
X
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.223
  • R-Value Work: 0.199
  • Space Group: C 2 2 21

Unit Cell:

Length (Å) Angle (°)
a = 118.05 α = 90.00
b = 134.48 β = 90.00
c = 137.26 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-02-25
  • Released Date: 2013-03-27
  • Deposition author(s): Dong, A., Wu, H., Zeng, H., Park, H., El Bakkouri, M., Barsyte, D., Vedadi, M., Tatlock, J., Owen, D., Bunnage, M., Bountra, C., Arrowsmith, C.H., Edwards, A.M., Brown, P.J., Structural Genomics Consortium (SGC)

Revision History

No revisions since initial release