4IWV

Crystals structure of Human Glucokinase in complex with small molecule activator

Structural Biology Knowledgebase: 4IWV SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.250
  • R-Value Work: 0.199

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4IWV

Classification: TRANSFERASE / TRANSFERASE INHIBITOR

Total Structure Weight: 51500.57

Macromolecule Entities
Molecule Chains Length Organism Details
Glucokinase isoform 3 A 456 Homo sapiens EC#: 2.7.1.2 IUBMB
Fragment: GLUCOKINASE
Mutation: E27A, E28A, E51A, E52A
Gene Name(s): GCK Gene View

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
1J9
Query on 1J9

A (2S)-2-{[1-(2-chlorophenyl)-1H-pyrazolo[3,4- d]pyrimidin-4-yl]oxy}-N-(5-chloropyridin- 2-yl)-3-(2-hydroxyethoxy)propanamide
C21 H18 Cl2 N6 O4
KTWRHJPPIZQGRW-KRWDZBQOSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GLC
Query on GLC

A ALPHA-D-GLUCOSE
C6 H12 O6
WQZGKKKJIJFFOK-DVKNGEFBSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NA
Query on NA

A SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.250
  • R-Value Work: 0.199
  • Space Group: P 41
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 77.94 α = 90.00
b = 77.94 β = 90.00
c = 85.35 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-01-24
  • Released Date: 2013-04-24
  • Deposition author(s): Ogg, D.J., Hargreaves, D., Gerhardt, S., Flavell, L., McAlister, M.

Revision History

No revisions since initial release