4IL0

Crystal structure of GlucDRP from E. coli K-12 MG1655 (EFI target EFI-506058)

Structural Biology Knowledgebase: 4IL0 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.231
  • R-Value Work: 0.173

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4IL0

Classification: LYASE

Total Structure Weight: 410331.56

Macromolecule Entities
Molecule Chains Length Organism Details
Glucarate dehydratase-related protein A, B, C..., D, E, F, G, HA, B, C, D, E, F, G, H 466 Escherichia coli EC#: 4.2.1 IUBMB
Gene Name(s): gudX ygcY b2788 JW2759
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
CIT
Query on CIT

A, B, C, D, E, F, G, H CITRIC ACID
C6 H8 O7
KRKNYBCHXYNGOX-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

E, G GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.231
  • R-Value Work: 0.173
  • Space Group: P 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 86.09 α = 101.47
b = 94.03 β = 96.74
c = 155.20 γ = 79.86

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-12-28
  • Released Date: 2013-01-16
  • Deposition author(s): Lukk, T., Ghasempur, S., Imker, H.J., Gerlt, J.A., Nair, S.K., Enzyme Function Initiative (EFI)

Revision History

No revisions since initial release