4IKP

Crystal structure of coactivator-associated arginine methyltransferase 1

Structural Biology Knowledgebase: 4IKP SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.231
  • R-Value Work: 0.203

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4IKP

Classification: TRANSFERASE

Total Structure Weight: 157028.14

Macromolecule Entities
Molecule Chains Length Organism Details
Histone-arginine methyltransferase CARM1 A, B, C, D 341 Homo sapiens EC#: 2.1.1.319 IUBMB
Fragment: UNP residues 140-480
Gene Name(s): CARM1 Gene View PRMT4

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
4IK
Query on 4IK

A, B, C, D (2S,5S)-2,6-diamino-5-{[(2R,3S,4R,5R)-5-(6- amino-9H-purin-9-yl)-3,4-dihydroxytetrahydrofuran- 2-yl]methyl}hexanoic acid
C16 H25 N7 O5
CPUNUFGYWFHFOF-TVDBPQCTSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

A, C, D GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
UNX
Query on UNX

A, B, C, D UNKNOWN ATOM OR ION
X
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.231
  • R-Value Work: 0.203
  • Space Group: P 21 21 2

Unit Cell:

Length (Å) Angle (°)
a = 75.06 α = 90.00
b = 98.84 β = 90.00
c = 206.63 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-12-27
  • Released Date: 2013-02-13
  • Deposition author(s): Dong, A., Dombrovski, L., He, H., Ibanez, G., Wernimont, A., Zheng, W., Bountra, C., Arrowsmith, C.H., Edwards, A.M., Brown, P.J., Min, J., Luo, M., Wu, H., Structural Genomics Consortium (SGC)

Revision History

  • 2013-05-15
    Type: Polymer description | Details: update residue numbering