4I8X

Crystal structure of rabbit LDHA in complex with AP27460

Structural Biology Knowledgebase: 4I8X SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.23 Å
  • R-Value Free: 0.236
  • R-Value Work: 0.201

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4I8X

Classification: OXIDOREDUCTASE / OXIDOREDUCTASE INHIBITOR

Total Structure Weight: 293447.27

Macromolecule Entities
Molecule Chains Length Organism Details
L-lactate dehydrogenase A chain A, B, C..., D, E, F, G, HA, B, C, D, E, F, G, H 331 Oryctolagus cuniculus EC#: 1.1.1.27 IUBMB
Gene Name(s): LDHA Gene View

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
6P3
Query on 6P3

A, B, C, D, E, F, G, H 6-phenylpyridine-3-carboxylic acid
C12 H9 N O2
DLFLQXUYRFIFOK-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
6P3 N/A in BindingDB
Kd: 2300000 nM  BindingMOAD
Kd: 2300000 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.23 Å
  • R-Value Free: 0.236
  • R-Value Work: 0.201
  • Space Group: P 1 21 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 84.07 α = 90.00
b = 139.85 β = 94.48
c = 139.17 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-12-04
  • Released Date: 2013-01-23
  • Deposition author(s): Zhou, T., Stephan, Z.G., Kohlmann, A., Li, F., Commodore, L., Greenfield, M.T., Zhu, X., Dalgarno, D.C.

Revision History

  • 2013-02-27
    Type: Citation | Details: Citation update