4HW7

Crystal structure of FMS kinase domain with a small molecular inhibitor, PLX647-OME

Structural Biology Knowledgebase: 4HW7 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.9 Å
  • R-Value Free: 0.267
  • R-Value Work: 0.220

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4HW7

Classification: TRANSFERASE / TRANSFERASE INHIBITOR

Total Structure Weight: 39052.91

Macromolecule Entities
Molecule Chains Length Organism Details
Macrophage colony-stimulating factor 1 receptor A 343 Homo sapiens EC#: 2.7.10.1 IUBMB
Fragment: FMS kinase domain with KID
Mutation: C667T, ΔG696, ΔV697, ΔD698, ΔY699, ΔK700, ΔN701, ΔI702, ΔH703, ΔL704, ΔE705, ΔK706, ΔK707, ΔY708, ΔV709, ΔR710, ΔR711, ΔD712, ΔS713, ΔG714, ΔF715, ΔS716, ΔS717, ΔQ718, ΔG719, ΔV720, ΔD721, ΔT722, ΔY723, ΔV724, ΔE725, ΔM726, ΔR727, ΔP728, ΔV729, ΔS730, ΔT731, ΔS732, ΔS733, ΔN734, ΔD735, ΔS736, ΔF737, ΔS738, ΔE739, ΔQ740, ΔD741, C830S, C907T
Gene Name(s): CSF1R Gene View FMS

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
64M
Query on 64M

A 5-[(5-methoxy-1H-pyrrolo[2,3-b]pyridin-3- yl)methyl]-N-[4-(trifluoromethyl)benzyl]pyridin- 2-amine
C22 H19 F3 N4 O
WLYQGNIWNGFGPH-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
64M N/A in BindingDB
N/A in BindingMoad
IC50: 62 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.9 Å
  • R-Value Free: 0.267
  • R-Value Work: 0.220
  • Space Group: P 43 21 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 62.96 α = 90.00
b = 62.96 β = 90.00
c = 182.78 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-11-07
  • Released Date: 2013-03-27
  • Deposition author(s): Zhang, Y., Zhang, C.

Revision History

  • 2013-04-17
    Type: Citation | Details: Citation update