4HUX

Crystal Structure of H2Db-H155A-NP

Structural Biology Knowledgebase: 4HUX SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.237
  • R-Value Work: 0.194

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4HUX

Classification: Immune system

Total Structure Weight: 45333.03

Macromolecule Entities
Molecule Chains Length Organism Details
H-2 class I histocompatibility antigen, D-B alpha chain A 280 Mus musculus Mutation: H155A
Gene Name(s): H2-D1
Beta-2-microglobulin B 99 Mus musculus Gene Name(s): B2m
NP peptide C 9 Influenza a virus Gene Name(s): NP

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
GOL
Query on GOL

A GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ACT
Query on ACT

B ACETATE ION
C2 H3 O2
QTBSBXVTEAMEQO-UHFFFAOYSA-M
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.237
  • R-Value Work: 0.194
  • Space Group: C 1 2 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 92.33 α = 90.00
b = 111.39 β = 122.72
c = 58.00 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-11-05
  • Released Date: 2013-02-27
  • Deposition author(s): Gras, S., Twist, K.A., Rossjohn, J.

Revision History

  • 2013-04-24
    Type: Citation | Details: Citation update
  • 2013-03-27
    Type: Citation | Details: Citation update