4HTG

Porphobilinogen Deaminase from Arabidopsis Thaliana

Structural Biology Knowledgebase: 4HTG SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.45 Å
  • R-Value Free: 0.217
  • R-Value Work: 0.145

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4HTG

Classification: TRANSFERASE / TRANSFERASE INHIBITOR

Total Structure Weight: 35151.55

Macromolecule Entities
Molecule Chains Length Organism Details
Porphobilinogen deaminase, chloroplastic A 320 Arabidopsis thaliana EC#: 2.5.1.61 IUBMB
Gene Name(s): HEMC RUG1 At5g08280 F8L15_10

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
18W
Query on 18W

A 3-[(5Z)-5-{[3-(2-carboxyethyl)-4-(carboxymethyl)- 5-methyl-1H-pyrrol-2-yl]methylidene}-4-(carboxymethyl)- 2-oxo-2,5-dihydro-1H-pyrrol-3-yl]propanoic acid
C20 H22 N2 O9
MBSNQHZDABRTAT-NVNXTCNLSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ACT
Query on ACT

A ACETATE ION
C2 H3 O2
QTBSBXVTEAMEQO-UHFFFAOYSA-M
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.45 Å
  • R-Value Free: 0.217
  • R-Value Work: 0.145
  • Space Group: C 1 2 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 141.57 α = 90.00
b = 37.27 β = 105.00
c = 55.07 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-11-01
  • Released Date: 2013-02-27
  • Deposition author(s): Roberts, A., Gill, R., Hussey, R.J., Erskine, P.T., Cooper, J.B., Wood, S.P., Chrystal, E.J.T., Shoolingin-Jordan, P.M.

Revision History

  • 2013-04-03
    Type: Citation | Details: Citation update