4HSI

Glycoprotein B from Herpes simplex virus type 1, A504P/R505G/Q507G/N511G mutant, low-pH

Structural Biology Knowledgebase: 4HSI SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.1 Å
  • R-Value Free: 0.255
  • R-Value Work: 0.205

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4HSI

Classification: VIRAL PROTEIN

Total Structure Weight: 317353.31

Macromolecule Entities
Molecule Chains Length Organism Details
Envelope glycoprotein B A, B, C, D 703 Human herpesvirus 1 Fragment: ectodomain
Mutation: T313S, Q443L, A504P, R505G, Q507G, N511G
Gene Name(s): gB UL27

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAG
Query on NAG

A, B, C, D N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MRY
Query on MRY

A, C MESO-ERYTHRITOL
C4 H10 O4
UNXHWFMMPAWVPI-ZXZARUISSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CL
Query on CL

A, B, C, D CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.1 Å
  • R-Value Free: 0.255
  • R-Value Work: 0.205
  • Space Group: P 3
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 117.29 α = 90.00
b = 117.29 β = 90.00
c = 321.87 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-10-30
  • Released Date: 2013-03-27
  • Deposition author(s): Heldwein, E.E.

Revision History

  • 2013-05-29
    Type: Citation | Details: Citation update