4HSE

Crystal structure of ClpB NBD1 in complex with guanidinium chloride and ADP

Structural Biology Knowledgebase: 4HSE SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.266
  • R-Value Work: 0.225

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4HSE

Classification: CHAPERONE

Total Structure Weight: 45565.53

Macromolecule Entities
Molecule Chains Length Organism Details
Chaperone protein ClpB A 397 Thermus thermophilus Fragment: ClpB NBD1-M (141-534)
Gene Name(s): clpB TTHA1487
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ADP
Query on ADP

A ADENOSINE-5'-DIPHOSPHATE
C10 H15 N5 O10 P2
XTWYTFMLZFPYCI-KQYNXXCUSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GAI
Query on GAI

A GUANIDINE
C H5 N3
ZRALSGWEFCBTJO-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CL
Query on CL

A CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
ADP N/A in BindingDB
Kd: 13700 nM  BindingMOAD
N/A in PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.266
  • R-Value Work: 0.225
  • Space Group: P 31 2 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 60.99 α = 90.00
b = 60.99 β = 90.00
c = 213.87 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-10-30
  • Released Date: 2013-01-30
  • Deposition author(s): Zeymer, C., Werbeck, N.D., Schlichting, I., Reinstein, J.

Revision History

  • 2013-04-03
    Type: Citation | Details: Citation update
  • 2013-02-13
    Type: Citation | Details: Citation update