4HHJ

Dengue serotype 3 RNA-dependent RNA polymerase

Structural Biology Knowledgebase: 4HHJ SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.79 Å
  • R-Value Free: 0.209
  • R-Value Work: 0.177

Literature

Macromolecules
Sequence Display for 4HHJ

Classification: TRANSFERASE

Total Structure Weight: 74356.98

Macromolecule Entities
Molecule Chains Length Organism Details
Non-structural protein 5 A 635 Dengue virus EC#: 2.7.7.48 IUBMB
Fragment: RNA-dependent RNA polymerase, UNP residues 2762-3390
Mutation: G374E
Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
P6G
Query on P6G

A HEXAETHYLENE GLYCOL
POLYETHYLENE GLYCOL PEG400 (Synonym)
C12 H26 O7
IIRDTKBZINWQAW-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
PEG
Query on PEG

A DI(HYDROXYETHYL)ETHER
C4 H10 O3
MTHSVFCYNBDYFN-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZN
Query on ZN

A ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.79 Å
  • R-Value Free: 0.209
  • R-Value Work: 0.177
  • Space Group: C 2 2 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 161.32 α = 90.00
b = 177.61 β = 90.00
c = 57.82 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-10-10
  • Released Date: 2013-02-27
  • Deposition author(s): Noble, C.G., Lescar, J.

Revision History

  • 2013-07-31
    Type: Citation | Details: Citation update