4HC9

DNA binding by GATA transcription factor-complex 3

Structural Biology Knowledgebase: 4HC9 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.6 Å
  • R-Value Free: 0.216
  • R-Value Work: 0.181

Literature

Macromolecules
Sequence Display for 4HC9

Classification: Transcription / DNA

Total Structure Weight: 25289.78


Macromolecule Entities
Molecule Chains Length Organism Details
Trans-acting T-cell-specific transcription factor GATA-3 A 115 Homo sapiens Fragment: UNP residues 260 -365
Gene Name(s): GATA3 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
DNA (5'-D(*TP*TP*CP*CP*TP*AP*AP*AP*TP*CP*AP*GP*AP*GP*AP*TP*AP*AP*CP*C)-3') Y 20 synthetic
DNA (5'-D(*AP*AP*GP*GP*TP*TP*AP*TP*CP*TP*CP*TP*GP*AP*TP*TP*TP*AP*GP*G)-3') Z 20 synthetic

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ZN
Query on ZN

A ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.6 Å
  • R-Value Free: 0.216
  • R-Value Work: 0.181
  • Space Group: C 1 2 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 126.12 α = 90.00
b = 30.35 β = 98.59
c = 72.47 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-09-28
  • Released Date: 2012-12-05
  • Deposition author(s): Chen, Y., Bates, D.L., Dey, R., Chen, L.

Revision History

  • 2014-12-17
    Type: Data collection | Details: --
  • 2013-01-02
    Type: Citation | Details: Citation update