4H0N

Crystal structure of Spodoptera frugiperda DNMT2 E260A/E261A/K263A mutant

Structural Biology Knowledgebase: 4H0N SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.71 Å
  • R-Value Free: 0.256
  • R-Value Work: 0.202

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4H0N

Classification: TRANSFERASE

Total Structure Weight: 155513.16

Macromolecule Entities
Molecule Chains Length Organism Details
DNMT2 A, B, C, D 333 Spodoptera frugiperda EC#: 2.1.1 IUBMB
Mutation: E260A, E261A, K263A
Gene Name(s): DNMT2

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SAH
Query on SAH

A, B, C, D S-ADENOSYL-L-HOMOCYSTEINE
C14 H20 N6 O5 S
ZJUKTBDSGOFHSH-WFMPWKQPSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CA
Query on CA

A, B, C, D CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.71 Å
  • R-Value Free: 0.256
  • R-Value Work: 0.202
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 97.39 α = 90.00
b = 106.15 β = 90.00
c = 151.02 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-09-09
  • Released Date: 2012-11-14
  • Deposition author(s): Li, S., Du, J., Yang, H., Yin, J., Zhong, J., Ding, J.

Revision History

  • 2013-02-27
    Type: Citation | Details: Citation update