4GV1

PKB alpha in complex with AZD5363

Structural Biology Knowledgebase: 4GV1 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.49 Å
  • R-Value Free: 0.210
  • R-Value Work: 0.181

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4GV1

Classification: TRANSFERASE / TRANSFERASE INHIBITOR

Total Structure Weight: 40191.50

Macromolecule Entities
Molecule Chains Length Organism Details
RAC-alpha serine/threonine-protein kinase A 340 Homo sapiens EC#: 2.7.11.1 IUBMB
Fragment: kinase domain (UNP residues 144-480)
Mutation: S473D, G478S
Gene Name(s): AKT1 Gene View PKB RAC

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
0XZ
Query on 0XZ

A 4-amino-N-[(1S)-1-(4-chlorophenyl)-3-hydroxypropyl]- 1-(7H-pyrrolo[2,3-d]pyrimidin-4-yl)piperidine- 4-carboxamide
C21 H25 Cl N6 O2
JDUBGYFRJFOXQC-KRWDZBQOSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

A GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
0XZ N/A in BindingDB
IC50: 3 nM  BindingMOAD
IC50: 3 nM  PDBbind
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
TPO
Query on TPO
A L-PEPTIDE LINKING C4 H10 N O6 P THR

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.49 Å
  • R-Value Free: 0.210
  • R-Value Work: 0.181
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 46.85 α = 90.00
b = 58.56 β = 90.00
c = 150.47 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-08-30
  • Released Date: 2013-02-27
  • Deposition author(s): Addie, M., Ballard, P., Bird, G., Buttar, D., Currie, G., Davies, B., Debreczeni, J., Dry, H., Dudley, P., Greenwood, R., Hatter, G., Jestel, A., Johnson, P.D., Kettle, J.G., Lane, C., Lamont, G., Leach, A., Luke, R.W.A., Ogilvie, D., Page, K., Pass, M., Steinbacher, S., Steuber, H., Pearson, S., Ruston, L.

Revision History

  • 2013-03-27
    Type: Citation | Details: Citation update