4GJU

5-Methylcytosine modified DNA oligomer


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.41 Å
  • R-Value Free: 0.215
  • R-Value Work: 0.177

Literature

Macromolecules
Sequence Display for 4GJU

Classification: DNA

Total Structure Weight: 7379.14

Macromolecule Entities
Molecule Chains Length Organism Details
5-Methylcytosine modified DNA oligomer A, B 12 Synthetic construct

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
MG
Query on MG

A MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
5CM
Query on 5CM
A, B DNA LINKING C10 H16 N3 O7 P DC

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.41 Å
  • R-Value Free: 0.215
  • R-Value Work: 0.177
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 25.50 α = 90.00
b = 40.40 β = 90.00
c = 65.50 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-08-10
  • Released Date: 2013-08-28
  • Deposition author(s): Spingler, B., Renciuk, D., Vorlickova, M.

Revision History

  • Version 1_0: 2013-08-28

    Type: Initial release

  • Version 1_1: 2013-09-04

    Type: Database references

  • Version 1_2: 2013-12-04

    Type: Database references