4GJT

complex structure of nectin-4 bound to MV-H

Structural Biology Knowledgebase: 4GJT SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.1 Å
  • R-Value Free: 0.278
  • R-Value Work: 0.260

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4GJT

Classification: MEMBRANE PROTEIN / VIRAL PROTEIN

Total Structure Weight: 79870.91

Macromolecule Entities
Molecule Chains Length Organism Details
Hemagglutinin glycoprotein A 473 Measles virus Fragment: MV-H fragment, 156-617
Gene Name(s): H
Poliovirus receptor-related protein 4 B, C 123 Homo sapiens Fragment: nectin-4 fragment, 32-145
Gene Name(s): PVRL4 LNIR PRR4 Gene View

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAG
Query on NAG

A N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.1 Å
  • R-Value Free: 0.278
  • R-Value Work: 0.260
  • Space Group: C 2 2 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 82.35 α = 90.00
b = 171.78 β = 90.00
c = 117.44 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-08-10
  • Released Date: 2012-10-10
  • Deposition author(s): Zhang, X., Lu, G., Qi, J., Li, Y., He, Y., Xu, X., Shi, J., Zhang, C., Yan, J., Gao, G.F.

Revision History

  • 2013-04-10
    Type: Citation | Details: Citation update