4GJI

Crystal structure of Pseudomonas stutzeri L-rhamnose isomerase mutant H101N in complex with L-rhamnopyranose

Structural Biology Knowledgebase: 4GJI SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.195
  • R-Value Work: 0.175

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4GJI

Classification: ISOMERASE

Total Structure Weight: 194279.53

Macromolecule Entities
Molecule Chains Length Organism Details
L-rhamnose isomerase A, B, C, D 438 Pseudomonas stutzeri EC#: 5.3.1.14 IUBMB
Fragment: TIM barrel
Mutation: H101N, D150N
Gene Name(s): L-RhI
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
RM4
Query on RM4

B, D 6-deoxy-beta-L-mannopyranose
C6 H12 O5
SHZGCJCMOBCMKK-YJRYQGEOSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
RNS
Query on RNS

A, B, C, D L-RHAMNOSE
C6 H12 O5
PNNNRSAQSRJVSB-BXKVDMCESA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
RAM
Query on RAM

A, B, C, D ALPHA-L-RHAMNOSE
C6 H12 O5
SHZGCJCMOBCMKK-HGVZOGFYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MN
Query on MN

A, B, C, D MANGANESE (II) ION
Mn
WAEMQWOKJMHJLA-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.195
  • R-Value Work: 0.175
  • Space Group: P 1 21 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 75.12 α = 90.00
b = 104.92 β = 106.01
c = 112.38 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-08-09
  • Released Date: 2012-12-12
  • Deposition author(s): Yoshida, H., Kamitori, S.

Revision History

  • 2014-05-28
    Type: Citation | Details: Citation update