4GJ9

Crystal structure of renin in complex with GP055321 (compound 4)

Structural Biology Knowledgebase: 4GJ9 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.6 Å
  • R-Value Free: 0.226
  • R-Value Work: 0.181

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4GJ9

Classification: HYDROLASE / HYDROLASE INHIBITOR

Total Structure Weight: 75561.86

Macromolecule Entities
Molecule Chains Length Organism Details
Renin A, B 340 Homo sapiens EC#: 3.4.23.15 IUBMB
Fragment: UNP residues 67-406
Gene Name(s): REN Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
0M2
Query on 0M2

A, B (2R)-1-(3,8-dihydrodibenzo[b,f]pyrrolo[3,4- d]azepin-2(1H)-yl)propan-2-ol
C19 H20 N2 O
KUHCFTHIRUPZQC-CYBMUJFWSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NAG
Query on NAG

A, B N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
0M2 N/A in BindingDB
N/A in BindingMoad
Kd: 500000 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.6 Å
  • R-Value Free: 0.226
  • R-Value Work: 0.181
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 67.00 α = 90.00
b = 108.75 β = 90.00
c = 138.44 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-08-09
  • Released Date: 2013-02-13
  • Deposition author(s): Ostermann, N., Zink, F., Kroemer, M.

Revision History

  • 2013-04-10
    Type: Citation | Details: Citation update