4GJ8

Crystal structure of renin in complex with PKF909-724 (compound 3)

Structural Biology Knowledgebase: 4GJ8 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.217
  • R-Value Work: 0.169

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4GJ8

Classification: HYDROLASE / HYDROLASE INHIBITOR

Total Structure Weight: 76145.62

Macromolecule Entities
Molecule Chains Length Organism Details
Renin A, B 340 Homo sapiens EC#: 3.4.23.15 IUBMB
Fragment: UNP residues 67-406
Gene Name(s): REN Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
0LU
Query on 0LU

A (2S)-1-(pyrrolidin-1-yl)-3-(9H-thioxanthen- 9-yl)propan-2-ol
C20 H23 N O S
SJCVUEZFZDNDKT-HNNXBMFYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
0LW
Query on 0LW

B (2R)-1-(pyrrolidin-1-yl)-3-(9H-thioxanthen- 9-yl)propan-2-ol
C20 H23 N O S
SJCVUEZFZDNDKT-OAHLLOKOSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NAG
Query on NAG

A, B N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

A, B SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.217
  • R-Value Work: 0.169
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 66.83 α = 90.00
b = 110.45 β = 90.00
c = 127.98 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-08-09
  • Released Date: 2013-02-13
  • Deposition author(s): Ostermann, N., Zink, F., Kroemer, M.

Revision History

  • 2013-04-10
    Type: Citation | Details: Citation update