4GFJ

Crystal structure of Topo-78, an N-terminal 78kDa fragment of topoisomerase V

Structural Biology Knowledgebase: 4GFJ SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.91 Å
  • R-Value Free: 0.267
  • R-Value Work: 0.201

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4GFJ

Classification: ISOMERASE

Total Structure Weight: 79018.63

Macromolecule Entities
Molecule Chains Length Organism Details
Topoisomerase V A 685 Methanopyrus kandleri Fragment: UNP residues 1-685
Gene Name(s): MK1436

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
GOL
Query on GOL

A GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZN
Query on ZN

A ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.91 Å
  • R-Value Free: 0.267
  • R-Value Work: 0.201
  • Space Group: P 61
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 161.63 α = 90.00
b = 161.63 β = 90.00
c = 58.23 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-08-03
  • Released Date: 2012-12-05
  • Deposition author(s): Rajan, R., Prasad, R., Taneja, B., Wilson, S.H., Mondragon, A.

Revision History

  • 2013-01-09
    Type: Citation | Details: Citation update