4FYO

Crystal structure of spleen tyrosine kinase complexed with N-{(S)-1-[7-(3,4-Dimethoxy-phenylamino)-thiazolo[5,4-d]pyrimidin-5-yl]-pyrrolidin-3-yl}-terephthalamic acid

Structural Biology Knowledgebase: 4FYO SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.4 Å
  • R-Value Free: 0.240
  • R-Value Work: 0.219

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4FYO

Classification: TRANSFERASE / TRANSFERASE INHIBITOR

Total Structure Weight: 34404.84

Macromolecule Entities
Molecule Chains Length Organism Details
Tyrosine-protein kinase SYK A 291 Homo sapiens EC#: 2.7.10.2 IUBMB
Fragment: RESIDUES 356-635, PROTEIN KINASE DOMAIN
Gene Name(s): SYK Gene View

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
0VF
Query on 0VF

A 4-{[(3S)-1-{7-[(3,4-dimethoxyphenyl)amino][1,3]thiazolo[5,4- d]pyrimidin-5-yl}pyrrolidin-3-yl]carbamoyl}benzoic acid
C25 H24 N6 O5 S
GRGCZORIQMQMAN-KRWDZBQOSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
0VF N/A in BindingDB
IC50: 47 nM  BindingMOAD
IC50: 47 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.4 Å
  • R-Value Free: 0.240
  • R-Value Work: 0.219
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 39.95 α = 90.00
b = 85.56 β = 90.00
c = 90.03 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-07-05
  • Released Date: 2013-01-30
  • Deposition author(s): Kuglstatter, A., Slade, M.

Revision History

No revisions since initial release