4FOJ

1.55 A Crystal Structure of Xanthomonas citri FimX EAL domain in complex with c-diGMP

Structural Biology Knowledgebase: 4FOJ SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.55 Å
  • R-Value Free: 0.232
  • R-Value Work: 0.182

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4FOJ

Classification: PROTEIN BINDING

Total Structure Weight: 30303.12

Macromolecule Entities
Molecule Chains Length Organism Details
FimX A 264 Xanthomonas citri Fragment: EAL domain (UNP residues 426-689)
Gene Name(s): XAC2398

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
C2E
Query on C2E

A 9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)- 3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro- 2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine- 2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin- 6-one)
c-di-GMP, Cyclic diguanosine monophosphate (Synonym)
C20 H24 N10 O14 P2
PKFDLKSEZWEFGL-MHARETSRSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.55 Å
  • R-Value Free: 0.232
  • R-Value Work: 0.182
  • Space Group: P 21 21 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 66.14 α = 90.00
b = 84.77 β = 90.00
c = 46.99 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-06-20
  • Released Date: 2013-03-27
  • Deposition author(s): Farah, C.S., Guzzo, C.R.

Revision History

  • 2013-06-12
    Type: Citation | Details: Citation update
  • 2013-04-03
    Type: Citation | Details: Citation update