4F8Z

Carboxypeptidase T with Boc-Leu

Structural Biology Knowledgebase: 4F8Z SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.38 Å
  • R-Value Free: 0.152
  • R-Value Work: 0.139

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4F8Z

Classification: HYDROLASE

Total Structure Weight: 39412.85

Macromolecule Entities
Molecule Chains Length Organism Details
Carboxypeptidase T A 323 Thermoactinomyces vulgaris EC#: 3.4.17.18 IUBMB
Fragment: UNP residues 99-421
Gene Name(s): cpt
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 5 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
BL2
Query on BL2

A N-(tert-butoxycarbonyl)-L-leucine
C11 H21 N O4
MDXGYYOJGPFFJL-QMMMGPOBSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

A SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

A GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZN
Query on ZN

A ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CA
Query on CA

A CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.38 Å
  • R-Value Free: 0.152
  • R-Value Work: 0.139
  • Space Group: P 63 2 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 157.91 α = 90.00
b = 157.91 β = 90.00
c = 104.07 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-05-18
  • Released Date: 2013-05-22
  • Deposition author(s): Timofeev, V.I., Kuznetsov, S.A., Akparov, V.K., Kuranova, I.P.

Revision History

  • 2015-09-30
    Type: Citation | Details: Citation update