4F4Z

Y-family DNA polymerase chimera Dpo4-Dpo4-Dbh

Structural Biology Knowledgebase: 4F4Z SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.31 Å
  • R-Value Free: 0.260
  • R-Value Work: 0.185

Literature

Macromolecules
Sequence Display for 4F4Z

Classification: TRANSFERASE / DNA

Total Structure Weight: 101307.55


Macromolecule Entities
Molecule Chains Length Organism Details
DNA polymerase IV A, B 361 Sulfolobus acidocaldarius Sulfolobus solfataricus EC#: 2.7.7.7 IUBMB
Gene Name(s): dbh Saci_0554 dpo4 SSO2448
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
DNA (5'-D(*AP*GP*GP*GP*GP*GP*AP*AP*GP*CP*CP*G)-3') C, P 12 Synthetic construct Primer DNA
DNA (5'-D(*TP*TP*CP*CP*GP*CP*CP*CP*GP*GP*CP*TP*TP*CP*CP*CP*CP*CP*T)-3') D, T 19 Synthetic construct Template DNA

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
CA
Query on CA

A, B CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.31 Å
  • R-Value Free: 0.260
  • R-Value Work: 0.185
  • Space Group: P 1

Unit Cell:

Length (Å) Angle (°)
a = 50.97 α = 75.60
b = 51.20 β = 82.97
c = 98.84 γ = 70.14

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-05-11
  • Released Date: 2013-01-02
  • Deposition author(s): Pata, J.D., Wilson, R.C.

Revision History

  • 2016-01-20
    Type: Source and taxonomy | Details: --
  • 2013-02-13
    Type: Citation | Details: Citation update