4EFA

Crystal Structure of the Heterotrimeric EGChead Peripheral Stalk Complex of the Yeast Vacuolar ATPase - second conformation

Structural Biology Knowledgebase: 4EFA SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.82 Å
  • R-Value Free: 0.277
  • R-Value Work: 0.229

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4EFA

Classification: HYDROLASE

Total Structure Weight: 54697.87

Macromolecule Entities
Molecule Chains Length Organism Details
V-type proton ATPase subunit C C 130 Saccharomyces cerevisiae EC#: 3.6.3.14 IUBMB
Fragment: UNP Residues 158-277
Gene Name(s): VMA5 VAT3 VATC YKL080W YKL410
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
V-type proton ATPase subunit G G 119 Saccharomyces cerevisiae EC#: 3.6.3.14 IUBMB
Gene Name(s): VMA10 YHR039C-A YHR039BC YHR039C-B
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
V-type proton ATPase subunit E E 233 Saccharomyces cerevisiae EC#: 3.6.3.14 IUBMB
Gene Name(s): VMA4 VAT5 YOR332W O6241
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SO4
Query on SO4

C, G SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.82 Å
  • R-Value Free: 0.277
  • R-Value Work: 0.229
  • Space Group: P 2 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 51.54 α = 90.00
b = 93.65 β = 90.00
c = 116.89 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-03-29
  • Released Date: 2012-10-10
  • Deposition author(s): Oot, R.A., Huang, L.S., Berry, E.A., Wilkens, S.

Revision History

  • 2012-11-28
    Type: Citation | Details: Citation update