4EE7

Crystal Structure of the Novel Phenazine Prenyltransferase EpzP in complex with S-thiolodiphosphate (methylated)

Structural Biology Knowledgebase: 4EE7 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.67 Å
  • R-Value Free: 0.224
  • R-Value Work: 0.188

Literature

Macromolecules
Sequence Display for 4EE7

Classification: TRANSFERASE

Total Structure Weight: 68680.47

Macromolecule Entities
Molecule Chains Length Organism Details
Prenyltransferase A, B 304 Streptomyces cinnamonensis Gene Name(s): epzP
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
PG4
Query on PG4

A, B TETRAETHYLENE GLYCOL
C8 H18 O5
UWHCKJMYHZGTIT-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
PIS
Query on PIS

A TRIHYDROGEN THIODIPHOSPHATE
THIOPYROPHOSPHATE (Synonym)
H3 O6 P2 S
HWTUHTNZLQJJEV-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

A, B SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CL
Query on CL

A CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MLY
Query on MLY
A, B L-PEPTIDE LINKING C8 H18 N2 O2 LYS

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.67 Å
  • R-Value Free: 0.224
  • R-Value Work: 0.188
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 42.11 α = 90.00
b = 97.01 β = 90.00
c = 135.86 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-03-28
  • Released Date: 2012-11-14
  • Deposition author(s): Zocher, G., Stehle, T.

Revision History

No revisions since initial release