4EBR

Crystal structure of Autophagic E2, Atg10

Structural Biology Knowledgebase: 4EBR SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.7 Å
  • R-Value Free: 0.251
  • R-Value Work: 0.211

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4EBR

Classification: ligase

Total Structure Weight: 40620.09

Macromolecule Entities
Molecule Chains Length Organism Details
Ubiquitin-like-conjugating enzyme ATG10 A, B 169 Saccharomyces cerevisiae EC#: 6.3.2 IUBMB
Gene Name(s): ATG10 Gene View APG10 YLL042C
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
HG
Query on HG

A, B MERCURY (II) ION
Hg
BQPIGGFYSBELGY-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A, B L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.7 Å
  • R-Value Free: 0.251
  • R-Value Work: 0.211
  • Space Group: P 61 2 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 127.83 α = 90.00
b = 127.83 β = 90.00
c = 169.59 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-03-24
  • Released Date: 2012-10-03
  • Deposition author(s): Hong, S.B., Kim, B.W., Kim, J.H., Song, H.K.

Revision History

  • 2013-07-24
    Type: Citation | Details: Citation update