4EAT

Crystal structure of a benzoate coenzyme A ligase

Structural Biology Knowledgebase: 4EAT SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.191
  • R-Value Work: 0.153

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4EAT

Classification: LIGASE

Total Structure Weight: 114230.56

Macromolecule Entities
Molecule Chains Length Organism Details
Benzoate-coenzyme A ligase A, B 524 Rhodopseudomonas palustris EC#: 6.2.1.25 IUBMB
Mutation: T83A, G341D
Gene Name(s): badA

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
BEZ
Query on BEZ

A, B BENZOIC ACID
C7 H6 O2
WPYMKLBDIGXBTP-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

B GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
EDO
Query on EDO

A, B 1,2-ETHANEDIOL
ETHYLENE GLYCOL (Synonym)
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.191
  • R-Value Work: 0.153
  • Space Group: P 1 21 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 58.65 α = 90.00
b = 96.02 β = 104.65
c = 95.38 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-03-22
  • Released Date: 2013-03-27
  • Deposition author(s): Geiger, J., Strom, S.

Revision History

  • 2016-01-20
    Type: Citation | Details: Citation update