4E4H

Crystal structure of Histone Demethylase NO66

Structural Biology Knowledgebase: 4E4H SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.28 Å
  • R-Value Free: 0.252
  • R-Value Work: 0.202

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4E4H

Classification: OXIDOREDUCTASE

Total Structure Weight: 211113.44

Macromolecule Entities
Molecule Chains Length Organism Details
Lysine-specific demethylase NO66 A, B, C, D 463 Homo sapiens EC#: 1.14.11.27 IUBMB
Fragment: UNP RESIDUES 183-641
Mutation: V364A
Gene Name(s): NO66 C14orf169 Gene View MAPJD

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
PEG
Query on PEG

C DI(HYDROXYETHYL)ETHER
C4 H10 O3
MTHSVFCYNBDYFN-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

C GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ACT
Query on ACT

A ACETATE ION
C2 H3 O2
QTBSBXVTEAMEQO-UHFFFAOYSA-M
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
FE
Query on FE

A, B, C, D FE (III) ION
Fe
VTLYFUHAOXGGBS-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.28 Å
  • R-Value Free: 0.252
  • R-Value Work: 0.202
  • Space Group: P 32
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 89.35 α = 90.00
b = 89.35 β = 90.00
c = 304.86 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-03-13
  • Released Date: 2013-01-30
  • Deposition author(s): Wu, M., Tao, Y., Zang, J.

Revision History

No revisions since initial release