4E1T

X-ray crystal structure of the transmembrane beta-domain from invasin from Yersinia pseudotuberculosis

Structural Biology Knowledgebase: 4E1T SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.26 Å
  • R-Value Free: 0.260
  • R-Value Work: 0.188

Literature

Macromolecules
Sequence Display for 4E1T

Classification: CELL ADHESION

Total Structure Weight: 32496.27

Macromolecule Entities
Molecule Chains Length Organism Details
Invasin A 245 Yersinia pseudotuberculosis Fragment: transmembrane domain (UNP residues 147-390)
Mutation: L352F
Gene Name(s): YPTB1668
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Membrane Protein

Source: mpstruc | Group: BETA-BARREL

Subgroup Name: Outer Membrane Autotransporters

Protein Name: Invasin outer membrane β-domain


Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
OLB
Query on OLB

A (2S)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate
C21 H40 O4
RZRNAYUHWVFMIP-QJRAZLAKSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
OLC
Query on OLC

A (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate
1-Oleoyl-R-glycerol (Synonym)
C21 H40 O4
RZRNAYUHWVFMIP-GDCKJWNLSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.26 Å
  • R-Value Free: 0.260
  • R-Value Work: 0.188
  • Space Group: C 2 2 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 79.40 α = 90.00
b = 124.89 β = 90.00
c = 65.07 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-03-07
  • Released Date: 2012-06-13
  • Deposition author(s): Fairman, J.W., Dautin, N., Wojtowicz, D., Wei, L., Noinaj, N., Barnard, T.J., Udho, E., Finkelstein, A., Przytycka, T.M., Cherezov, V., Buchanan, S.K.

Revision History

  • 2012-07-25
    Type: Citation | Details: Citation update