4DXO

Crystal Structure of a reconstructed Kaede-type Red Fluorescent Protein, LEA X(6)

Structural Biology Knowledgebase: 4DXO SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.253
  • R-Value Work: 0.187

Literature

Macromolecules
Sequence Display for 4DXO

Classification: LUMINESCENT PROTEIN

Total Structure Weight: 26422.19

Macromolecule Entities
Molecule Chains Length Organism Details
LEA X(6) GFP-LIKE PROTEINS A 230 Synthetic construct

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NA
Query on NA

A SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
CR8
Query on CR8
A L-PEPTIDE LINKING C17 H16 N5 O4 HIS , TYR , GLY

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.253
  • R-Value Work: 0.187
  • Space Group: I 2 2 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 47.65 α = 90.00
b = 78.34 β = 90.00
c = 119.43 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-02-27
  • Released Date: 2013-02-27
  • Deposition author(s): Kim, H., Fromme, R., Wachter, R.M.

Revision History

  • 2015-04-22
    Type: Citation | Details: Citation update
  • 2015-02-04
    Type: Other | Details: single wavelenght