4DTT

Crystal structure of human insulin degrading enzyme (ide) in complex with compund 41367

Structural Biology Knowledgebase: 4DTT SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.22 Å
  • R-Value Free: 0.242
  • R-Value Work: 0.175

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4DTT

Classification: HYDROLASE / HYDROLASE INHIBITOR

Total Structure Weight: 230753.31

Macromolecule Entities
Molecule Chains Length Organism Details
Insulin-degrading enzyme A, B 990 Homo sapiens EC#: 3.4.24.56 IUBMB
Fragment: UNP RESIDUES 42-1019
Mutation: C110L, C171S, C178A, C257V, C414L, C573N, C590S, C789S, C812A, C819A, C904S, C966N, C974A
Gene Name(s): IDE Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
I41
Query on I41

A, B 2-[[2-[[(2S)-3-(3H-IMIDAZOL-4-YL)-1-METHOXY- 1-OXO-PROPAN-2-YL]AMINO]-2-OXO-ETHYL]-(PHENYLMETHYL)AMINO]ETHANOIC ACID
COMPOUND 41367 (Synonym)
C18 H22 N4 O5
VJXRDRMNYWCCEG-HNNXBMFYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZN
Query on ZN

A, B ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.22 Å
  • R-Value Free: 0.242
  • R-Value Work: 0.175
  • Space Group: P 65
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 263.52 α = 90.00
b = 263.52 β = 90.00
c = 90.40 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-02-21
  • Released Date: 2013-02-27
  • Deposition author(s): Guo, Q., Deprez-Poulain, R., Deprez, B., Tang, W.J.

Revision History

  • 2014-05-28
    Type: Citation | Details: Citation update
  • 2014-04-16
    Type: Citation | Details: Citation update