4DBQ

MYOSIN VI D179Y (MD-INSERT2-CAM, DELTA-INSERT1) post-rigor state

Structural Biology Knowledgebase: 4DBQ SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.6 Å
  • R-Value Free: 0.223
  • R-Value Work: 0.170

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4DBQ

Classification: motor protein calcium binding protein

Total Structure Weight: 107739.91

Macromolecule Entities
Molecule Chains Length Organism Details
Myosin-VI A 788 Sus scrofa Fragment: MOTOR DOMAIN-INSERT2, unp F1RQI7 residues 2-277, 304-815
Mutation: D179Y
Gene Name(s): MYO6 Gene View
Calmodulin B 149 Drosophila melanogaster Gene Name(s): Cam CG8472

Small Molecules
Ligands 5 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ADP
Query on ADP

A ADENOSINE-5'-DIPHOSPHATE
C10 H15 N5 O10 P2
XTWYTFMLZFPYCI-KQYNXXCUSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

A, B SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
BEF
Query on BEF

A BERYLLIUM TRIFLUORIDE ION
Be F3
OGIAHMCCNXDTIE-UHFFFAOYSA-K
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CA
Query on CA

B CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.6 Å
  • R-Value Free: 0.223
  • R-Value Work: 0.170
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 73.31 α = 90.00
b = 107.88 β = 90.00
c = 179.95 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-01-16
  • Released Date: 2013-01-30
  • Deposition author(s): Pylypenko, O., Sweeney, H.L., Houdusse, A.

Revision History

No revisions since initial release