4D8D

Crystal structure of HIV-1 NEF Fyn-SH3 R96W variant

Structural Biology Knowledgebase: 4D8D SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.52 Å
  • R-Value Free: 0.238
  • R-Value Work: 0.212

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4D8D

Classification: TRANSFERASE / PROTEIN BINDING

Total Structure Weight: 48534.45

Macromolecule Entities
Molecule Chains Length Organism Details
Tyrosine-protein kinase Fyn A, C 58 Homo sapiens EC#: 2.7.10.2 IUBMB
Fragment: SRC-HOMOLOGY 3 DOMAIN (UNP Residues 84-141)
Mutation: R96W
Gene Name(s): FYN Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Protein Nef B, D 151 Human immunodeficiency virus 1 Fragment: CONSERVED CORE DOMAIN (UNP Residues 58-204)
Gene Name(s): nef
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
GOL
Query on GOL

C GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.52 Å
  • R-Value Free: 0.238
  • R-Value Work: 0.212
  • Space Group: P 65 2 2

Unit Cell:

Length (Å) Angle (°)
a = 108.01 α = 90.00
b = 108.01 β = 90.00
c = 224.96 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-01-10
  • Released Date: 2013-01-16
  • Deposition author(s): Arold, S.T., Hoh, F., Dumas, C.

Revision History

No revisions since initial release