4C69

ATP binding to murine voltage-dependent anion channel 1 (mVDAC1).


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.28 Å
  • R-Value Free: 0.261
  • R-Value Work: 0.204

Literature

Macromolecules
Sequence Display for 4C69

Classification: TRANSPORT PROTEIN

Total Structure Weight: 35435.73

Macromolecule Entities
Molecule Chains Length Organism Details
VOLTAGE-DEPENDENT ANION-SELECTIVE CHANNEL PROTEIN 1 X 295 Mus musculus Gene Name(s): Vdac1 Vdac5
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Membrane Protein

Source: mpstruc | Group: BETA-BARREL

Subgroup Name: Beta-Barrel Membrane Proteins: Mitochondrial Outer Membrane

Protein Name: VDAC-1 voltage dependent anion channel


Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
MC3
Query on MC3

X 1,2-DIMYRISTOYL-RAC-GLYCERO-3-PHOSPHOCHOLINE
C36 H72 N O8 P
CITHEXJVPOWHKC-UUWRZZSWSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ATP
Query on ATP

X ADENOSINE-5'-TRIPHOSPHATE
C10 H16 N5 O13 P3
ZKHQWZAMYRWXGA-KQYNXXCUSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
LDA
Query on LDA

X LAURYL DIMETHYLAMINE-N-OXIDE
C14 H31 N O
SYELZBGXAIXKHU-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.28 Å
  • R-Value Free: 0.261
  • R-Value Work: 0.204
  • Space Group: C 1 2 1

Unit Cell:

Length (Å) Angle (°)
a = 100.15 α = 90.00
b = 58.37 β = 99.25
c = 66.54 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-09-17
  • Released Date: 2014-06-04
  • Deposition author(s): Paz, A., Colletier, J.P., Abramson, J.

Revision History

  • 2014-07-16
    Type: Citation | Details: JRNL
  • 2014-06-18
    Type: Citation | Details: JRNL
  • 2014-06-11
    Type: Citation | Details: JRNL