4BUM

Crystal structure of the Voltage Dependant Anion Channel 2 from zebrafish.

Structural Biology Knowledgebase: 4BUM SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.282
  • R-Value Work: 0.245

Literature

Macromolecules
Sequence Display for 4BUM

Classification: MEMBRANE PROTEIN

Total Structure Weight: 31378.50

Macromolecule Entities
Molecule Chains Length Organism Details
VOLTAGE-DEPENDENT ANION CHANNEL 2 X 289 Danio rerio Gene Name(s): vdac2
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Membrane Protein

Source: mpstruc | Group: BETA-BARREL

Subgroup Name: Beta-Barrel Membrane Proteins: Mitochondrial Outer Membrane

Protein Name: VDAC-2 voltage dependent anion channel


Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
LDA
Query on LDA

X LAURYL DIMETHYLAMINE-N-OXIDE
C14 H31 N O
SYELZBGXAIXKHU-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.282
  • R-Value Work: 0.245
  • Space Group: P 32 2 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 72.47 α = 90.00
b = 72.47 β = 90.00
c = 177.95 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-06-21
  • Released Date: 2014-03-26
  • Deposition author(s): Paz, A., Schredelseker, J., Abramson, J.

Revision History

  • 2014-05-14
    Type: Citation | Details: JRNL
  • 2014-04-09
    Type: Entry title | Details: TITLE