4B22

Unprecedented shaping of abasic sites by DNA glycosylase homolog Mag2 from Schizosaccharomyces pombe

Structural Biology Knowledgebase: 4B22 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.281
  • R-Value Work: 0.280

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4B22

Classification: HYDROLASE

Total Structure Weight: 32961.66


Macromolecule Entities
Molecule Chains Length Organism Details
MAG2, DNA-3-METHYLADENINE GLYCOSYLASE 2 A 232 Schizosaccharomyces pombe EC#: 3.2.2.21 IUBMB
Gene Name(s): mag2 SPBC23G7.11
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
5'-D(*GP*CP*TP*AP*CP*(3DR)P*CP*AP*TP*CP*GP)-3' X 11 Synthetic construct
5'-D(*CP*GP*AP*TP*GP*GP*GP*TP*AP*GP*CP)-3' Y 11 Synthetic construct

Small Molecules
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
3DR
Query on 3DR
X DNA LINKING C5 H11 O6 P --

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.281
  • R-Value Work: 0.280
  • Space Group: I 2 2 2

Unit Cell:

Length (Å) Angle (°)
a = 68.48 α = 90.00
b = 84.52 β = 90.00
c = 125.75 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-07-12
  • Released Date: 2013-01-09
  • Deposition author(s): Dalhus, B., Nilsen, L., Korvald, H., Huffman, J., Forstrom, R.J., Mcmurray, C.T., Alseth, I., Tainer, J.A., Bjoras, M.

Revision History

  • 2013-01-30
    Type: Citation | Details: JRNL