4AZ9

Crystal structure of phox homology domain of human sorting nexin 24

Structural Biology Knowledgebase: 4AZ9 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.75 Å
  • R-Value Free: 0.205
  • R-Value Work: 0.181

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4AZ9

Classification: PROTEIN TRANSPORT

Total Structure Weight: 31144.13

Macromolecule Entities
Molecule Chains Length Organism Details
SORTING NEXIN-24 A, B 129 Homo sapiens Fragment: PHOX HOMOLOGY DOMAIN, RESIDUES 160-266
Gene Name(s): SNX24 Gene View SBBI31 UNQ654/PRO1284

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
EDO
Query on EDO

A 1,2-ETHANEDIOL
ETHYLENE GLYCOL (Synonym)
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.75 Å
  • R-Value Free: 0.205
  • R-Value Work: 0.181
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 43.53 α = 90.00
b = 54.24 β = 90.00
c = 122.66 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-06-24
  • Released Date: 2012-10-10
  • Deposition author(s): Oberholzer, A.E., Kiyani, W., Krojer, T., Shrestha, L., von Delft, F., Froese, D.S., Chaikuad, A., Raynor, J., Arrowsmith, C., Edwards, A., Bountra, C., Yue, W.W.

Revision History

  • 2013-11-20
    Type: Biological assembly | Details: REMARK 350
  • 2013-11-20
    Type: Entry title | Details: TITLE
  • 2012-12-05
    Type: Entry authorship | Details: AUTHOR