4AUA

Liganded X-ray crystal structure of cyclin dependent kinase 6 (CDK6)

Structural Biology Knowledgebase: 4AUA SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.31 Å
  • R-Value Free: 0.277
  • R-Value Work: 0.207

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4AUA

Classification: TRANSFERASE

Total Structure Weight: 35230.72

Macromolecule Entities
Molecule Chains Length Organism Details
CYCLIN-DEPENDENT KINASE 6 A 307 Homo sapiens EC#: 2.7.11.22 IUBMB
Fragment: KINASE DOMAIN, RESIDUES 1-301
Gene Name(s): CDK6 Gene View CDKN6

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
4AU
Query on 4AU

A 1H-benzimidazol-2-yl(1H-pyrrol-2-yl)methanone
C12 H9 N3 O
WKGKIJSPPFRZEQ-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
4AU N/A in BindingDB
IC50: 7200 nM  BindingMOAD
IC50: 7200 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.31 Å
  • R-Value Free: 0.277
  • R-Value Work: 0.207
  • Space Group: I 4
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 100.73 α = 90.00
b = 100.73 β = 90.00
c = 60.30 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-05-15
  • Released Date: 2013-02-06
  • Deposition author(s): Cho, Y.S., Angove, H., Brain, C., Chen, C.H.T., Cheng, R., Chopra, R., Chung, K., Congreve, M., Dagostin, C., Davis, D., Feltell, R., Giraldes, J., Hiscock, S., Kim, S., Kovats, S., Lagu, B., Lewry, K., Loo, A., Lu, Y., Luzzio, M., Maniara, W., Mcmenamin, R., Mortenson, P., Benning, R., Oreilly, M., Rees, D., Shen, J., Smith, T., Wang, Y., Williams, G., Woolford, A., Wrona, W., Xu, M., Yang, F., Howard, S.

Revision History

  • 2014-06-18
    Type: Citation | Details: JRNL