4AGI

Crystal Structure of Fucose binding lectin from Aspergillus Fumigatus (AFL) in complex with seleno fucoside.

Structural Biology Knowledgebase: 4AGI SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.6 Å
  • R-Value Free: 0.185
  • R-Value Work: 0.152

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4AGI

Classification: SUGAR-BINDING PROTEIN

Total Structure Weight: 145220.84

Macromolecule Entities
Molecule Chains Length Organism Details
FUCOSE-SPECIFIC LECTIN FLEA A, B, C, D 315 Aspergillus fumigatus Mutation: L20S, R111X
Gene Name(s): AFUA_5G14740

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SFU
Query on SFU

A, B, C, D METHYL 6-DEOXY-1-SELENO-ALPHA-L-GALACTOPYRANOSIDE
METHYL 1-SELENO-ALPHA-L-FUCOPYRANOSIDE (Synonym)
C7 H14 O4 Se
VHTNTJQSKJZERS-XUVCUMPTSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 2 Unique
ID Chains Type Formula 2D Diagram Parent
CSK
Query on CSK
A, B, C, D L-PEPTIDE LINKING C4 H9 N O2 S Se --
CSD
Query on CSD
A, B, C, D L-PEPTIDE LINKING C3 H7 N O4 S CYS

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.6 Å
  • R-Value Free: 0.185
  • R-Value Work: 0.152
  • Space Group: P 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 46.69 α = 91.09
b = 79.85 β = 88.89
c = 84.39 γ = 103.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-01-30
  • Released Date: 2013-02-06
  • Deposition author(s): Houser, J., Komarek, J., Kostlanova, N., Lahmann, M., Cioci, G., Varrot, A., Imberty, A., Wimmerova, M.

Revision History

  • 2014-11-05
    Type: Non-polymer description | Details: HET, HETSYN, FORMUL, HETNAM
  • 2014-11-05
    Type: Refinement description | Details: REMARK 3
  • 2014-11-05
    Type: Other | Details: MASTER, MODRES, REMARK 900
  • 2014-11-05
    Type: Atom nomenclature | Details: HETATM
  • 2014-11-05
    Type: Linkage | Details: LINK
  • 2014-11-05
    Type: Binding sites and description | Details: SITE
  • 2014-11-05
    Type: Citation | Details: JRNL
  • 2014-11-05
    Type: Polymer description | Details: SEQRES
  • 2014-01-08
    Type: Citation | Details: JRNL