4A99

STRUCTURE OF THE TETRACYCLINE DEGRADING MONOOXYGENASE TETX IN COMPLEX WITH MINOCYCLINE

Structural Biology Knowledgebase: 4A99 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.18 Å
  • R-Value Free: 0.235
  • R-Value Work: 0.185

Literature

Macromolecules
Sequence Display for 4A99

Classification: FLAVOPROTEIN

Total Structure Weight: 186578.03

Macromolecule Entities
Molecule Chains Length Organism Details
TETX2 PROTEIN A, B, C, D 398 Bacteroides thetaiotaomicron Fragment: FAD-BINDING DOMAIN, RESIDUES 11-388
Gene Name(s): tetX2
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
FAD
Query on FAD

A, B, C, D FLAVIN-ADENINE DINUCLEOTIDE
C27 H33 N9 O15 P2
VWWQXMAJTJZDQX-UYBVJOGSSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MIY
Query on MIY

A, B, C, D (4S,4AS,5AR,12AS)-4,7-BIS(DIMETHYLAMINO)- 3,10,12,12A-TETRAHYDROXY-1,11-DIOXO-1,4,4A,5,5A,6,11,12A- OCTAHYDROTETRACENE-2-CARBOXAMIDE
MINOCYCLINE (Synonym)
C23 H27 N3 O7
DYKFCLLONBREIL-KVUCHLLUSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

A, B, C, D SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.18 Å
  • R-Value Free: 0.235
  • R-Value Work: 0.185
  • Space Group: P 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 68.88 α = 110.82
b = 80.33 β = 90.27
c = 86.63 γ = 93.39

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2011-11-25
  • Released Date: 2012-12-12
  • Deposition author(s): Volkers, G., Palm, G.J., Weiss, M.S., Hinrichs, W.

Revision History

  • 2013-09-11
    Type: Citation | Details: JRNL
  • 2013-08-28
    Type: Entry authorship | Details: AUTHOR
  • 2013-08-28
    Type: Citation | Details: JRNL