3ZO0

Mouse IgG2a in complex with mouse TRIM21 PRYSPRY

Structural Biology Knowledgebase: 3ZO0 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.99 Å
  • R-Value Free: 0.253
  • R-Value Work: 0.181

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3ZO0

Classification: IMMUNE SYSTEM / LIGASE

Total Structure Weight: 46096.23

Macromolecule Entities
Molecule Chains Length Organism Details
IG GAMMA-2A CHAIN C REGION, A ALLELE A 208 Mus musculus Fragment: FC, RESIDUES 120-327
Mutation: T444S
Gene Name(s): Ighg
E3 UBIQUITIN-PROTEIN LIGASE TRIM21 B 182 Mus musculus EC#: 6.3.2 IUBMB
Fragment: RESIDUES 291-470
Mutation: D107K
Gene Name(s): Trim21 Ro52 Ssa1

Small Molecules
Ligands 5 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAG
Query on NAG

A N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
BMA
Query on BMA

A BETA-D-MANNOSE
C6 H12 O6
WQZGKKKJIJFFOK-RWOPYEJCSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GAL
Query on GAL

A BETA-D-GALACTOSE
C6 H12 O6
WQZGKKKJIJFFOK-FPRJBGLDSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MAN
Query on MAN

A ALPHA-D-MANNOSE
C6 H12 O6
WQZGKKKJIJFFOK-PQMKYFCFSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
FUC
Query on FUC

A ALPHA-L-FUCOSE
C6 H12 O5
SHZGCJCMOBCMKK-SXUWKVJYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.99 Å
  • R-Value Free: 0.253
  • R-Value Work: 0.181
  • Space Group: C 2 2 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 45.46 α = 90.00
b = 186.18 β = 90.00
c = 124.88 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-02-19
  • Released Date: 2013-05-22
  • Deposition author(s): James, L.C.
  • Previous versions: 2VOL

Revision History

No revisions since initial release