3ZLN

Crystal structure of Bcl-xL in complex with inhibitor (Compound 3).

Structural Biology Knowledgebase: 3ZLN SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.29 Å
  • R-Value Free: 0.247
  • R-Value Work: 0.184

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3ZLN

Classification: APOPTOSIS

Total Structure Weight: 21625.97

Macromolecule Entities
Molecule Chains Length Organism Details
BCL-2-LIKE PROTEIN 1 A 181 Homo sapiens Fragment: RESIDUES 1-44 AND 85-209
Gene Name(s): BCL2L1 Gene View BCL2L BCLX
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
H0Y
Query on H0Y

A 6-[(8E)-8-(1,3-benzothiazol-2-ylhydrazinylidene)- 6,7-dihydro-5H-naphthalen-2-yl]pyridine-2- carboxylic acid
C23 H18 N4 O2 S
ZGERKAMDOWOUTN-NLRVBDNBSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

A SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
EDO
Query on EDO

A 1,2-ETHANEDIOL
ETHYLENE GLYCOL (Synonym)
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
H0Y N/A in BindingDB
Kd: 3.4 nM  BindingMOAD
Kd: 3.4 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.29 Å
  • R-Value Free: 0.247
  • R-Value Work: 0.184
  • Space Group: P 41 21 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 65.91 α = 90.00
b = 65.91 β = 90.00
c = 115.07 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-02-04
  • Released Date: 2013-04-24
  • Deposition author(s): Czabotar, P.E., Lessene, G.L., Smith, B.J., Colman, P.M.

Revision History

  • 2013-06-05
    Type: Citation | Details: JRNL
  • 2013-05-08
    Type: Citation | Details: JRNL