3ZFE

Human enterovirus 71 in complex with capsid binding inhibitor WIN51711

Structural Biology Knowledgebase: 3ZFE SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.7 Å
  • R-Value Observed: 0.240

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3ZFE

Classification: VIRUS [ VIPERdb ]

Total Structure Weight: 5707922.50

Macromolecule Entities
Molecule Chains Length Organism Details
VP1 A 298 Enterovirus a Details: VIRION OF HUMAN ENTEROVIRUS 71
Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
VP2 B 254 Enterovirus a Details: VIRION OF HUMAN ENTEROVIRUS 71
Gene Name(s):
VP3 C 242 Enterovirus a Details: VIRION OF HUMAN ENTEROVIRUS 71
Gene Name(s):
VP4 D 69 Enterovirus a Details: VIRION OF HUMAN ENTEROVIRUS 71
Gene Name(s):

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SPH
Query on SPH

A SPHINGOSINE
C18 H37 N O2
WWUZIQQURGPMPG-MSOLQXFVSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CL
Query on CL

C CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NA
Query on NA

A, B, C SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.7 Å
  • R-Value Observed: 0.240
  • Space Group: I 2 3

Unit Cell:

Length (Å) Angle (°)
a = 594.50 α = 90.00
b = 594.50 β = 90.00
c = 594.50 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-12-11
  • Released Date: 2013-03-27
  • Deposition author(s): Plevka, P., Perera, R., Yap, M.L., Cardosa, J., Kuhn, R.J., Rossmann, M.G.

Revision History

  • 2013-04-10
    Type: Citation | Details: JRNL