3ZBY

Ligand-free structure of CYP142 from Mycobacterium smegmatis

Structural Biology Knowledgebase: 3ZBY SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.93 Å
  • R-Value Free: 0.230
  • R-Value Work: 0.190

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3ZBY

Classification: OXIDOREDUCTASE

Total Structure Weight: 287196.70

Macromolecule Entities
Molecule Chains Length Organism Details
P450 HEME-THIOLATE PROTEIN A, B, C..., D, E, FA, B, C, D, E, F 407 Mycobacterium smegmatis Details: 6XHIS TAG ENGINEERED AT C-TERMINUS
Gene Name(s): MSMEG_5918

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
BCD
Query on BCD

A, B, C, D, E, F BETA-CYCLODEXTRIN
CYCLO-HEPTA-AMYLOSE (Synonym)
C42 H70 O35
WHGYBXFWUBPSRW-FOUAGVGXSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
HEM
Query on HEM

A, B, C, D, E, F PROTOPORPHYRIN IX CONTAINING FE
HEME (Synonym)
C34 H32 Fe N4 O4
KABFMIBPWCXCRK-RGGAHWMASA-L
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

A, B, C, D, E, F SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
EDO
Query on EDO

A, B, C, D, E, F 1,2-ETHANEDIOL
ETHYLENE GLYCOL (Synonym)
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.93 Å
  • R-Value Free: 0.230
  • R-Value Work: 0.190
  • Space Group: C 1 2 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 94.05 α = 90.00
b = 162.85 β = 90.00
c = 266.44 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-11-13
  • Released Date: 2013-02-27
  • Deposition author(s): Garcia-Fernandez, E., Frank, D.J., Galan, B., Kells, P.M., Podust, L.M., Garcia, J.L., Ortiz de Montellano, P.R.

Revision History

  • 2013-08-14
    Type: Citation | Details: JRNL
  • 2013-05-01
    Type: Citation | Details: JRNL