3WFS

tRNA processing enzyme complex 3

Structural Biology Knowledgebase: 3WFS SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.31 Å
  • R-Value Free: 0.276
  • R-Value Work: 0.229

Literature

Macromolecules
Sequence Display for 3WFS

Classification: Transferase / RNA

Total Structure Weight: 161972.13


Macromolecule Entities
Molecule Chains Length Organism Details
Poly A polymerase C, D 512 Aquifex aeolicus EC#: 2.7.7.72 IUBMB
Gene Name(s): pcnB2 aq_2158
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
RNA (74-MER) A, B 74 Thermotoga maritima

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SO4
Query on SO4

C, D SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
UNK
Query on UNK
C, D L-PEPTIDE LINKING C4 H9 N O2 --

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.31 Å
  • R-Value Free: 0.276
  • R-Value Work: 0.229
  • Space Group: C 1 2 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 177.21 α = 90.00
b = 148.11 β = 98.54
c = 92.25 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-07-23
  • Released Date: 2014-01-01
  • Deposition author(s): Yamashita, S., Takeshita, D., Tomita, K.

Revision History

  • 2014-08-13
    Type: Citation | Details: Citation update